Package index

Data Preparation

Functions for setting up IPD and AgD for ML-UMR analysis

set_ipd_unanchored()

Set up IPD for unanchored comparison

set_agd_unanchored()

Set up AgD for unanchored comparison

combine_unanchored()

Combine IPD and AgD for unanchored comparison

add_integration_unanchored()

Add numerical integration points for unanchored comparison

Model Fitting

Core ML-UMR model fitting function

mlumr()

Fit Multilevel Unanchored Meta-Regression Model

Marginal Effects and Prediction

Calculate and visualize marginal treatment effects

marginal_effects()

Calculate Marginal Treatment Effects

predict(<mlumr_fit>)

Predictions from ML-UMR Model

Model Diagnostics and Comparison

Assess model fit and compare models

calculate_dic()

Calculate DIC for model comparison

compare_models()

Compare models using DIC

plot_diagnostics()

Plot MCMC diagnostics

extract_parameters()

Extract parameter estimates

Visualization

Plotting functions for results and diagnostics

print(<mlumr_fit>) summary(<mlumr_fit>) plot(<mlumr_fit>)

S3 Methods for mlumr_fit Objects

plot_marginal_effects_forest()

Plot Marginal Effects Forest Plot

plot_covariate_distribution()

Plot covariate distributions

plot_forest_comparison()

Forest Plot Comparing Adjusted vs Unadjusted Estimates

plot_posterior_predictive()

Posterior Predictive Check Plot

plot_parameter_correlation()

Parameter Correlation Heatmap

plot_model_comparison()

Model Comparison Plot

Reporting

Generate analysis reports

generate_report()

Generate Comprehensive HTML Report for ML-UMR Analysis

Data Simulation

Generate simulation data for testing and validation

generate_simulation_data()

Generate Simulation Data for ML-UMR

Utility Functions

Helper functions for distributions and priors

distr()

Specify a marginal distribution

qbern() pbern() dbern()

Bernoulli distribution functions

prior_normal()

Prior Specifications for ML-UMR

unnest_integration()

Unnest integration points

S3 Methods

Methods for mlumr objects

print(<mlumr_fit>) summary(<mlumr_fit>) plot(<mlumr_fit>)

S3 Methods for mlumr_fit Objects

print(<unanchored_data>)

Print method for unanchored_data

print(<simulation_data>)

Print method for simulation_data

print(<mlumr_dic>)

Print method for DIC