rtransparency: Identify indicators of transparency in the biomedical literature

Detects and extracts ten indicators of transparency (conflicts of interest, funding, protocol registration, novelty, replication, data sharing, code sharing, disclosure of generative-AI use, open-access licensing, and reporting-guideline use) from PubMed Central XML or plain-text articles. For each indicator it returns a prediction and the statement or value that triggered it. This package builds on the original rtransparent tool of Serghiou et al. (2021).

See also

Useful links:

• https://github.com/choxos/rtransparency

• https://choxos.github.io/rtransparency/

• Report bugs at https://github.com/choxos/rtransparency/issues

Author

Maintainer: Ahmad Sofi-Mahmudi a.sofimahmudi@gmail.com (ORCID)

Authors:

• Ahmad Sofi-Mahmudi a.sofimahmudi@gmail.com (ORCID)

• Stylianos Serghiou stelios.serghiou@gmail.com