Emits the assessment as W3C Data Quality Vocabulary quality measurements (one
per FAIR category and one per metric) plus a schema.org Rating, the
machine-readable form the F-UJI service publishes, and one FAIR Test Result
per metric test using the OSTrails FAIR Testing Resource vocabulary
(https://w3id.org/ftr/, version 1.3.0): prov:value pass or fail,
ftr:completion, the evidence as ftr:log, and for failed tests the
fair_recommendations() action as an ftr:suggestion. Metrics and tests are
identified within the metric specification (for example
https://doi.org/10.5281/zenodo.6461229#FsF-F1-01MD-1).
Usage
as_rdf(x, format = c("jsonld", "turtle"))Arguments
- x
A fair_assessment object.
- format
"jsonld"(default) or"turtle"(needs the optionalrdflibandjsonldpackages).
Examples
# \donttest{
a <- assess_fair("https://doi.org/10.5281/zenodo.8347772")
cat(as_rdf(a))
#> {
#> "@context": {
#> "dcat": "http://www.w3.org/ns/dcat#",
#> "dc": "http://purl.org/dc/terms/",
#> "schema": "http://schema.org/",
#> "dqv": "http://www.w3.org/ns/dqv#",
#> "prov": "http://www.w3.org/ns/prov#",
#> "ftr": "https://w3id.org/ftr#",
#> "rfair": "https://github.com/choxos/rfair#"
#> },
#> "@type": ["schema:Dataset", "dqv:QualityMetadata", "schema:Rating"],
#> "dc:creator": "rfair",
#> "dc:title": "FAIR assessment results for https://doi.org/10.5281/zenodo.8347772",
#> "dc:source": "https://doi.org/10.5281/zenodo.8347772",
#> "schema:ratingValue": 88.46,
#> "schema:bestRating": 100,
#> "schema:worstRating": 0,
#> "schema:reviewAspect": "FAIRness",
#> "prov:wasGeneratedBy": {
#> "@type": "prov:Activity",
#> "prov:used": "https://doi.org/10.5281/zenodo.8347772"
#> },
#> "prov:wasDerivedFrom": {
#> "@type": "ftr:TestResultSet",
#> "prov:hadMember": [
#> {
#> "@type": "ftr:TestResult",
#> "dc:identifier": "FsF-F1-01MD-1",
#> "dc:title": "Metadata identifier follows a defined unique identifier syntax or scheme (IRI, URL, UUID, HASH or PID)",
#> "prov:value": "pass",
#> "ftr:completion": 1,
#> "ftr:outputFromTest": {
#> "@id": "https://doi.org/10.5281/zenodo.15045911#FsF-F1-01MD-1"
#> },
#> "ftr:assessmentTarget": {
#> "@id": "https://zenodo.org/records/8347772"
#> },
#> "ftr:log": "doi"
#> },
#> {
#> "@type": "ftr:TestResult",
#> "dc:identifier": "FsF-F1-01MD-2",
#> "dc:title": "Data identifier follows a defined unique identifier syntax (IRI, URL, UUID, HASH or PID)",
#> "prov:value": "fail",
#> "ftr:completion": 0,
#> "ftr:outputFromTest": {
#> "@id": "https://doi.org/10.5281/zenodo.15045911#FsF-F1-01MD-2"
#> },
#> "ftr:assessmentTarget": {
#> "@id": "https://zenodo.org/records/8347772"
#> },
#> "ftr:suggestion": {
#> "@type": "ftr:GuidanceContext",
#> "dc:description": "Give each data file a unique identifier (a stable URL or PID) and list it in the metadata."
#> }
#> },
#> {
#> "@type": "ftr:TestResult",
#> "dc:identifier": "FsF-F1-02MD-1",
#> "dc:title": "Metadata identifier follows a defined persistent identifier syntax",
#> "prov:value": "pass",
#> "ftr:completion": 1,
#> "ftr:outputFromTest": {
#> "@id": "https://doi.org/10.5281/zenodo.15045911#FsF-F1-02MD-1"
#> },
#> "ftr:assessmentTarget": {
#> "@id": "https://zenodo.org/records/8347772"
#> },
#> "ftr:log": "doi"
#> },
#> {
#> "@type": "ftr:TestResult",
#> "dc:identifier": "FsF-F1-02MD-2",
#> "dc:title": "Persistent identifier for metadata is registered and maintained by a PID authority",
#> "prov:value": "pass",
#> "ftr:completion": 1,
#> "ftr:outputFromTest": {
#> "@id": "https://doi.org/10.5281/zenodo.15045911#FsF-F1-02MD-2"
#> },
#> "ftr:assessmentTarget": {
#> "@id": "https://zenodo.org/records/8347772"
#> },
#> "ftr:log": "https://zenodo.org/records/8347772"
#> },
#> {
#> "@type": "ftr:TestResult",
#> "dc:identifier": "FsF-F1-02MD-4",
#> "dc:title": "Data identifier follows a defined persistent identifier syntax",
#> "prov:value": "fail",
#> "ftr:completion": 0,
#> "ftr:outputFromTest": {
#> "@id": "https://doi.org/10.5281/zenodo.15045911#FsF-F1-02MD-4"
#> },
#> "ftr:assessmentTarget": {
#> "@id": "https://zenodo.org/records/8347772"
#> },
#> "ftr:suggestion": {
#> "@type": "ftr:GuidanceContext",
#> "dc:description": "Give the data files persistent identifiers, or link them from a record that has one."
#> }
#> },
#> {
#> "@type": "ftr:TestResult",
#> "dc:identifier": "FsF-F1-02MD-5",
#> "dc:title": "Persistent identifier for data is registered and maintained by a PID authority",
#> "prov:value": "fail",
#> "ftr:completion": 0,
#> "ftr:outputFromTest": {
#> "@id": "https://doi.org/10.5281/zenodo.15045911#FsF-F1-02MD-5"
#> },
#> "ftr:assessmentTarget": {
#> "@id": "https://zenodo.org/records/8347772"
#> },
#> "ftr:suggestion": {
#> "@type": "ftr:GuidanceContext",
#> "dc:description": "Register the data file identifiers with a PID authority so they resolve reliably."
#> }
#> },
#> {
#> "@type": "ftr:TestResult",
#> "dc:identifier": "FsF-F2-01M-2",
#> "dc:title": "Core data citation metadata is available",
#> "prov:value": "pass",
#> "ftr:completion": 1,
#> "ftr:outputFromTest": {
#> "@id": "https://doi.org/10.5281/zenodo.15045911#FsF-F2-01M-2"
#> },
#> "ftr:assessmentTarget": {
#> "@id": "https://zenodo.org/records/8347772"
#> },
#> "ftr:log": "creator, title, object_identifier, publication_date, publisher, object_type"
#> },
#> {
#> "@type": "ftr:TestResult",
#> "dc:identifier": "FsF-F2-01M-3",
#> "dc:title": "Core descriptive metadata is available",
#> "prov:value": "pass",
#> "ftr:completion": 1,
#> "ftr:outputFromTest": {
#> "@id": "https://doi.org/10.5281/zenodo.15045911#FsF-F2-01M-3"
#> },
#> "ftr:assessmentTarget": {
#> "@id": "https://zenodo.org/records/8347772"
#> },
#> "ftr:log": "creator, title, object_identifier, publication_date, publisher, object_type, summary, keywords"
#> },
#> {
#> "@type": "ftr:TestResult",
#> "dc:identifier": "FsF-F3-01M-2",
#> "dc:title": "Metadata contains a PID or URL which indicates the location of the downloadable data content",
#> "prov:value": "pass",
#> "ftr:completion": 1,
#> "ftr:outputFromTest": {
#> "@id": "https://doi.org/10.5281/zenodo.15045911#FsF-F3-01M-2"
#> },
#> "ftr:assessmentTarget": {
#> "@id": "https://zenodo.org/records/8347772"
#> },
#> "ftr:log": "https://zenodo.org/records/8347772/files/pangaea-data-publisher/fuji-v2.2.5.zip"
#> },
#> {
#> "@type": "ftr:TestResult",
#> "dc:identifier": "FsF-F4-01M-1",
#> "dc:title": "Metadata is given in a way major search engines can ingest it for their catalogues (Dublin Core or schema.org or DCAT encoded in microdata, RDFa, embedded JSON-LD or meta tags see e.g. Google Dataset Search webmaster guidelines)",
#> "prov:value": "pass",
#> "ftr:completion": 1,
#> "ftr:outputFromTest": {
#> "@id": "https://doi.org/10.5281/zenodo.15045911#FsF-F4-01M-1"
#> },
#> "ftr:assessmentTarget": {
#> "@id": "https://zenodo.org/records/8347772"
#> },
#> "ftr:log": "schema.org; opengraph; highwire"
#> },
#> {
#> "@type": "ftr:TestResult",
#> "dc:identifier": "FsF-A1-01M-1",
#> "dc:title": "Information about access restrictions or rights can be identified in metadata",
#> "prov:value": "pass",
#> "ftr:completion": 1,
#> "ftr:outputFromTest": {
#> "@id": "https://doi.org/10.5281/zenodo.15045911#FsF-A1-01M-1"
#> },
#> "ftr:assessmentTarget": {
#> "@id": "https://zenodo.org/records/8347772"
#> },
#> "ftr:log": "info:eu-repo/semantics/openAccess"
#> },
#> {
#> "@type": "ftr:TestResult",
#> "dc:identifier": "FsF-A1-02MD-1",
#> "dc:title": "Metadata are retrievable via their specified identifier",
#> "prov:value": "pass",
#> "ftr:completion": 1,
#> "ftr:outputFromTest": {
#> "@id": "https://doi.org/10.5281/zenodo.15045911#FsF-A1-02MD-1"
#> },
#> "ftr:assessmentTarget": {
#> "@id": "https://zenodo.org/records/8347772"
#> },
#> "ftr:log": "https://zenodo.org/records/8347772; https://zenodo.org/api/records/8347772; https://data.crosscite.org/10.5281%2Fzenodo.8347772"
#> },
#> {
#> "@type": "ftr:TestResult",
#> "dc:identifier": "FsF-A1-02MD-2",
#> "dc:title": "Data are retrievable via the identifiers given in metadata",
#> "prov:value": "pass",
#> "ftr:completion": 1,
#> "ftr:outputFromTest": {
#> "@id": "https://doi.org/10.5281/zenodo.15045911#FsF-A1-02MD-2"
#> },
#> "ftr:assessmentTarget": {
#> "@id": "https://zenodo.org/records/8347772"
#> },
#> "ftr:log": "https://zenodo.org/records/8347772/files/pangaea-data-publisher/fuji-v2.2.5.zip"
#> },
#> {
#> "@type": "ftr:TestResult",
#> "dc:identifier": "FsF-A1.1-01MD-1",
#> "dc:title": "Identifier leading to metadata matches a scheme indicating a standardized web communication protocol.",
#> "prov:value": "pass",
#> "ftr:completion": 1,
#> "ftr:outputFromTest": {
#> "@id": "https://doi.org/10.5281/zenodo.15045911#FsF-A1.1-01MD-1"
#> },
#> "ftr:assessmentTarget": {
#> "@id": "https://zenodo.org/records/8347772"
#> },
#> "ftr:log": "https"
#> },
#> {
#> "@type": "ftr:TestResult",
#> "dc:identifier": "FsF-A1.1-01MD-2",
#> "dc:title": "Identifier leading to data are matching a schema indicating a standardized web communication protocol.",
#> "prov:value": "pass",
#> "ftr:completion": 1,
#> "ftr:outputFromTest": {
#> "@id": "https://doi.org/10.5281/zenodo.15045911#FsF-A1.1-01MD-2"
#> },
#> "ftr:assessmentTarget": {
#> "@id": "https://zenodo.org/records/8347772"
#> },
#> "ftr:log": "https://zenodo.org/records/8347772/files/pangaea-data-publisher/fuji-v2.2.5.zip"
#> },
#> {
#> "@type": "ftr:TestResult",
#> "dc:identifier": "FsF-A1.2-01MD-1",
#> "dc:title": "The communication protocol found in identifiers (IRIs) leading to metadata supports authentication.",
#> "prov:value": "pass",
#> "ftr:completion": 1,
#> "ftr:outputFromTest": {
#> "@id": "https://doi.org/10.5281/zenodo.15045911#FsF-A1.2-01MD-1"
#> },
#> "ftr:assessmentTarget": {
#> "@id": "https://zenodo.org/records/8347772"
#> },
#> "ftr:log": "https"
#> },
#> {
#> "@type": "ftr:TestResult",
#> "dc:identifier": "FsF-A1.2-01MD-2",
#> "dc:title": "The communication protocol identified in data links (IRIs) supports authentication.",
#> "prov:value": "pass",
#> "ftr:completion": 1,
#> "ftr:outputFromTest": {
#> "@id": "https://doi.org/10.5281/zenodo.15045911#FsF-A1.2-01MD-2"
#> },
#> "ftr:assessmentTarget": {
#> "@id": "https://zenodo.org/records/8347772"
#> },
#> "ftr:log": "https://zenodo.org/records/8347772/files/pangaea-data-publisher/fuji-v2.2.5.zip"
#> },
#> {
#> "@type": "ftr:TestResult",
#> "dc:identifier": "FsF-I1-01M-1",
#> "dc:title": "Parsable, structured metadata (JSON-LD, RDFa) is embedded in the landing page XHTML/HTML code",
#> "prov:value": "pass",
#> "ftr:completion": 1,
#> "ftr:outputFromTest": {
#> "@id": "https://doi.org/10.5281/zenodo.15045911#FsF-I1-01M-1"
#> },
#> "ftr:assessmentTarget": {
#> "@id": "https://zenodo.org/records/8347772"
#> },
#> "ftr:log": "embedded JSON-LD/RDFa"
#> },
#> {
#> "@type": "ftr:TestResult",
#> "dc:identifier": "FsF-I1-01M-2",
#> "dc:title": "Parsable, structured metadata (RDF, JSON-LD) is accessible through content negotiation, typed links or sparql endpoint",
#> "prov:value": "pass",
#> "ftr:completion": 1,
#> "ftr:outputFromTest": {
#> "@id": "https://doi.org/10.5281/zenodo.15045911#FsF-I1-01M-2"
#> },
#> "ftr:assessmentTarget": {
#> "@id": "https://zenodo.org/records/8347772"
#> },
#> "ftr:log": "content negotiation"
#> },
#> {
#> "@type": "ftr:TestResult",
#> "dc:identifier": "FsF-I2-01M-2",
#> "dc:title": "Metadata uses terms from registered vocabularies that are identified by their namespaces",
#> "prov:value": "fail",
#> "ftr:completion": 0,
#> "ftr:outputFromTest": {
#> "@id": "https://doi.org/10.5281/zenodo.15045911#FsF-I2-01M-2"
#> },
#> "ftr:assessmentTarget": {
#> "@id": "https://zenodo.org/records/8347772"
#> },
#> "ftr:suggestion": {
#> "@type": "ftr:GuidanceContext",
#> "dc:description": "Use terms from registered semantic vocabularies (for example ontologies listed in BioPortal or the LOD cloud) and expose their namespaces in RDF metadata."
#> }
#> },
#> {
#> "@type": "ftr:TestResult",
#> "dc:identifier": "FsF-I3-01M-1",
#> "dc:title": "Related resources are referenced in plain text within appropriate metadata properties indicating the relation type",
#> "prov:value": "pass",
#> "ftr:completion": 1,
#> "ftr:outputFromTest": {
#> "@id": "https://doi.org/10.5281/zenodo.15045911#FsF-I3-01M-1"
#> },
#> "ftr:assessmentTarget": {
#> "@id": "https://zenodo.org/records/8347772"
#> },
#> "ftr:log": "2 related resources"
#> },
#> {
#> "@type": "ftr:TestResult",
#> "dc:identifier": "FsF-I3-01M-2",
#> "dc:title": "Related resources are referenced by machine readable links or identifiers within appropriate metadata properties indicating the relation type",
#> "prov:value": "pass",
#> "ftr:completion": 1,
#> "ftr:outputFromTest": {
#> "@id": "https://doi.org/10.5281/zenodo.15045911#FsF-I3-01M-2"
#> },
#> "ftr:assessmentTarget": {
#> "@id": "https://zenodo.org/records/8347772"
#> },
#> "ftr:log": "qualified by identifiers"
#> },
#> {
#> "@type": "ftr:TestResult",
#> "dc:identifier": "FsF-R1-01M-1",
#> "dc:title": "Minimum information (resource type) about the available data content is specified in the metadata",
#> "prov:value": "pass",
#> "ftr:completion": 1,
#> "ftr:outputFromTest": {
#> "@id": "https://doi.org/10.5281/zenodo.15045911#FsF-R1-01M-1"
#> },
#> "ftr:assessmentTarget": {
#> "@id": "https://zenodo.org/records/8347772"
#> },
#> "ftr:log": "https://schema.org/SoftwareSourceCode; Software; SoftwareSourceCode; https://zenodo.org/records/8347772/files/pangaea-data-publisher/fuji-v2.2.5.zip"
#> },
#> {
#> "@type": "ftr:TestResult",
#> "dc:identifier": "FsF-R1-01M-2",
#> "dc:title": "Information on the manner and form (file size and type or service (API) endpoint and protocol) in which data is delivered is provided",
#> "prov:value": "pass",
#> "ftr:completion": 1,
#> "ftr:outputFromTest": {
#> "@id": "https://doi.org/10.5281/zenodo.15045911#FsF-R1-01M-2"
#> },
#> "ftr:assessmentTarget": {
#> "@id": "https://zenodo.org/records/8347772"
#> },
#> "ftr:log": "file type/size, data links, or service endpoint"
#> },
#> {
#> "@type": "ftr:TestResult",
#> "dc:identifier": "FsF-R1-01M-3",
#> "dc:title": "Measured variables or observation types are specified in metadata",
#> "prov:value": "pass",
#> "ftr:completion": 1,
#> "ftr:outputFromTest": {
#> "@id": "https://doi.org/10.5281/zenodo.15045911#FsF-R1-01M-3"
#> },
#> "ftr:assessmentTarget": {
#> "@id": "https://zenodo.org/records/8347772"
#> },
#> "ftr:log": "declared content descriptor"
#> },
#> {
#> "@type": "ftr:TestResult",
#> "dc:identifier": "FsF-R1.1-01M-1",
#> "dc:title": "Licence information is given in an appropriate metadata element",
#> "prov:value": "pass",
#> "ftr:completion": 1,
#> "ftr:outputFromTest": {
#> "@id": "https://doi.org/10.5281/zenodo.15045911#FsF-R1.1-01M-1"
#> },
#> "ftr:assessmentTarget": {
#> "@id": "https://zenodo.org/records/8347772"
#> },
#> "ftr:log": "https://opensource.org/license/mit/; https://opensource.org/licenses/MIT; info:eu-repo/semantics/openAccess; MIT License; Open Access"
#> },
#> {
#> "@type": "ftr:TestResult",
#> "dc:identifier": "FsF-R1.2-01M-1",
#> "dc:title": "Metadata contains elements which hold provenance information which can be mapped to PROV based on PROV-DC.",
#> "prov:value": "pass",
#> "ftr:completion": 1,
#> "ftr:outputFromTest": {
#> "@id": "https://doi.org/10.5281/zenodo.15045911#FsF-R1.2-01M-1"
#> },
#> "ftr:assessmentTarget": {
#> "@id": "https://zenodo.org/records/8347772"
#> },
#> "ftr:log": "creator; publisher; modified_date; publication_date; related_resources; object_type"
#> },
#> {
#> "@type": "ftr:TestResult",
#> "dc:identifier": "FsF-R1.2-01M-2",
#> "dc:title": "Metadata contains elements which hold provenance information using formal provenance ontologies (PROV, PAV).",
#> "prov:value": "fail",
#> "ftr:completion": 0,
#> "ftr:outputFromTest": {
#> "@id": "https://doi.org/10.5281/zenodo.15045911#FsF-R1.2-01M-2"
#> },
#> "ftr:assessmentTarget": {
#> "@id": "https://zenodo.org/records/8347772"
#> },
#> "ftr:suggestion": {
#> "@type": "ftr:GuidanceContext",
#> "dc:description": "Express provenance with a formal ontology such as PROV-O or PAV in RDF metadata."
#> }
#> },
#> {
#> "@type": "ftr:TestResult",
#> "dc:identifier": "FsF-R1.3-01M-1",
#> "dc:title": "Community specific metadata standard is detected using namespaces or schemas found in provided metadata",
#> "prov:value": "fail",
#> "ftr:completion": 0,
#> "ftr:outputFromTest": {
#> "@id": "https://doi.org/10.5281/zenodo.15045911#FsF-R1.3-01M-1"
#> },
#> "ftr:assessmentTarget": {
#> "@id": "https://zenodo.org/records/8347772"
#> },
#> "ftr:suggestion": {
#> "@type": "ftr:GuidanceContext",
#> "dc:description": "Describe the data with a metadata standard of its research community (for example EML, ISO 19115, DDI, or a domain schema) and expose it."
#> }
#> },
#> {
#> "@type": "ftr:TestResult",
#> "dc:identifier": "FsF-R1.3-01M-3",
#> "dc:title": "Multidisciplinary but community endorsed metadata (RDA Metadata Standards Catalog, fairsharing) standard is detected by namespace",
#> "prov:value": "pass",
#> "ftr:completion": 1,
#> "ftr:outputFromTest": {
#> "@id": "https://doi.org/10.5281/zenodo.15045911#FsF-R1.3-01M-3"
#> },
#> "ftr:assessmentTarget": {
#> "@id": "https://zenodo.org/records/8347772"
#> },
#> "ftr:log": "schemaorg; datacite"
#> },
#> {
#> "@type": "ftr:TestResult",
#> "dc:identifier": "FsF-R1.3-02D-1",
#> "dc:title": "Data is available in a file format recommended by the research community (long term file formats, open file formats or scientific file format)",
#> "prov:value": "fail",
#> "ftr:completion": 0,
#> "ftr:outputFromTest": {
#> "@id": "https://doi.org/10.5281/zenodo.15045911#FsF-R1.3-02D-1"
#> },
#> "ftr:assessmentTarget": {
#> "@id": "https://zenodo.org/records/8347772"
#> },
#> "ftr:suggestion": {
#> "@type": "ftr:GuidanceContext",
#> "dc:description": "Publish the data in an open, long-term, or community-recommended file format (for example CSV, NetCDF, HDF5) and declare the format in the metadata."
#> }
#> }
#> ]
#> },
#> "rfair:metricVersion": "0.8",
#> "rfair:softwareVersion": "0.2.0",
#> "dqv:hasQualityMeasurement": [
#> {
#> "@type": "dqv:QualityMeasurement",
#> "dqv:value": 100,
#> "dqv:isMeasurementOf": "https://w3id.org/fair/principles/terms/F"
#> },
#> {
#> "@type": "dqv:QualityMeasurement",
#> "dqv:value": 100,
#> "dqv:isMeasurementOf": "https://w3id.org/fair/principles/terms/A"
#> },
#> {
#> "@type": "dqv:QualityMeasurement",
#> "dqv:value": 66.67,
#> "dqv:isMeasurementOf": "https://w3id.org/fair/principles/terms/I"
#> },
#> {
#> "@type": "dqv:QualityMeasurement",
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