Check a Zotero library for retracted references — check

Reads a Zotero SQLite database directly (read-only) and checks every item's DOI and title. If Zotero has the library open the database may be locked; in that case export the library via Better BibTeX and use check_file().

Usage

check_zotero(
  path = zotero_default_db(),
  sources = getOption("retraction.sources", "xera"),
  offline = FALSE,
  flag_nature = c("Retraction", "Expression of Concern"),
  allow_fuzzy = TRUE,
  resolve_ids = TRUE,
  progress = TRUE,
  strict = FALSE
)

Arguments

path: Path to zotero.sqlite, or the directory containing it. Defaults to the standard per-user location.
sources: Sources to query. A character vector of names from list_backends(), or "all". Defaults to getOption("retraction.sources", "xera").
offline: If TRUE, match against the local snapshot built by retraction_sync() instead of querying the network.
flag_nature: Notice labels that count as "flag this citation". Defaults to Retraction and Expression of Concern.
allow_fuzzy: Allow fuzzy title matching for references without a usable identifier.
resolve_ids: If TRUE, resolve PMID-only references to a DOI via OpenAlex before matching.
progress: Show a progress bar in interactive sessions.
strict: If TRUE, error when any reference cannot be checked (an unchecked row from a network or source failure) instead of returning it, so a failure cannot be mistaken for a clean result. Useful in CI.

Value

A retraction_result tibble. Requires the suggested DBI and RSQLite packages.

Examples

if (FALSE) { # \dontrun{
check_zotero()
} # }