Resolve identifiers against public registries

Each resolver normalizes an identifier and, when resolve = TRUE and the registry is reachable, retrieves a display name and type. All calls degrade gracefully: offline or on error, resolved is FALSE.

Usage

resolve_rrid(rrid, resolve = TRUE, timeout = 15)

resolve_doi(doi, resolve = TRUE, timeout = 15)

resolve_orcid(orcid, resolve = TRUE, timeout = 15)

resolve_pubmed(pmid, resolve = TRUE, timeout = 15)

resolve_ror(ror, resolve = TRUE, timeout = 15)

resolve_cellosaurus(cvcl, resolve = TRUE, timeout = 15)

Arguments

rrid, doi, orcid, pmid, ror, cvcl: The identifier to resolve.
resolve: Whether to contact the registry (default TRUE). Set FALSE for a purely offline, normalize-only result.
timeout: Request timeout in seconds.

Value

A list with input, normalized, resolved, source, name, type, and url.

Examples

# Offline: normalize only (no network).
resolve_rrid("RRID:AB_390204", resolve = FALSE)
#> $input
#> [1] "RRID:AB_390204"
#> 
#> $normalized
#> [1] "RRID:AB_390204"
#> 
#> $resolved
#> [1] FALSE
#> 
#> $source
#> [1] "scicrunch"
#> 
#> $name
#> [1] NA
#> 
#> $type
#> [1] "Antibody"
#> 
#> $url
#> [1] NA
#> 
resolve_doi("10.1038/sdata.2016.18", resolve = FALSE)$normalized
#> [1] "10.1038/sdata.2016.18"
# \donttest{
# Live lookup. This contacts Crossref; offline it simply returns the
# normalized identifier with `resolved = FALSE` instead of failing.
resolve_doi("10.1038/sdata.2016.18", resolve = TRUE)$resolved
#> [1] TRUE
# }