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Export a KRT in the ASAP six-column format

Source: R/export_asap.R
export_asap.Rd

Projects the table to the ASAP columns and writes it as CSV or into an xlsx template. If template is supplied (or the bundled ASAP template is used), the data is written into its KRT sheet, preserving its dropdowns and attribution worksheet.

Usage

export_asap(
  x,
  path = NULL,
  template = NULL,
  format = NULL,
  audience = c("author", "public"),
  redact = NULL,
  attribution = TRUE
)

Arguments

x

A krt_tbl.

path

Output path, or NULL to return CSV text.

template

Optional xlsx template path. When supplied, output is xlsx.

format

"csv" or "xlsx"; inferred from path/template.

audience

"author" (full) or "public" (redacted).

redact

Redaction strength for public output, or FALSE to disable.

attribution

If TRUE (default) and a path is given, write the ASAP CC BY 4.0 attribution block as a sidecar next to it.

Value

The path (invisibly) when written, or CSV text.

Examples

cat(substr(export_asap(krt_example), 1, 60))
#> Warning: lossy-export: 14 field(s) are not preserved as columns in 'asap': resource_id, antibody_host, antibody_clonality, target, notes, cellosaurus_id, authentication_method, authentication_date, mycoplasma_status, organism.
#> "RESOURCE TYPE","RESOURCE NAME","SOURCE","IDENTIFIER","NEW/R